Publications


Beardmore R. E.*, Cook E., Nilsson S., Smith A. R., Tillmann A., Esquivel B. D., Haynes K., Gow N. A. R., Brown A. J. P., White T. C. and Gudelj I.* (2018). Drug-mediated metabolic tipping between antibiotic resistant states in a mixed-species community. Nature Ecology & Evolution, 2, 1312–1320. (*co-corresponding authors).

Lindsay R. J., Pawlowska B. J., Gudelj I. (2018). When increasing population density can promote the evolution of metabolic cooperation. ISME J, 12(3), 849-859.

Takano S., Pawlowska B. J., Gudelj I., Yomo T., Tsuru S. (2017). Density-Dependent Recycling Promotes the Long-Term Survival of Bacterial Populations during Periods of Starvation. MBio, 8(1).

Reding-Roman C., Hewlett M., Duxbury S., Gori F., Gudelj I. and Beardmore R. E. (2017). The unconstrained evolution of fast and efficient antibiotic-resistant bacterial genomes. Nature Ecology & Evolution, 1(3).

Lindsay R. J., Kershaw M. J., Pawlowska B. J., Talbot N. J. and Gudelj I. (2016). Harbouring public good mutants within a pathogen population can increase both fitness and virulence. Elife, 5.

Rashkov P., Barrett I. P., Beardmore R. E., Bendtsen C.* and Gudelj I.* (2016). Kinase Inhibition Leads to Hormesis in a Dual Phosphorylation-Dephosphorylation Cycle. PLoS Computational Biology, 12(11). (*corresponding authors)

Gudelj I.*, Kinnersley M., Rashkov P., Schmidt K. and Rosenzweig F. (2016). Stability of Cross-Feeding Polymorphisms in Microbial Communities. PloS Computational Biology, 12(12). (*corresponding author)

Fuentes-Hernandez A., Plucain J., Gori F., Pena-Miller R., Reading C., Jansen G., Schulenburg H., Gudelj I. and Beardmore R. E. (2015). Using a Sequential Regimen to Eliminate Bacteria at Sublethal Antibiotic Dosages. PloS Biology, DOI:10.1371/journal.pbio.1002104.

Meyer J. R., Gudelj I. and Beardmore R. E. (2015) Biophysics of biodiversity: cellular mechanisms that generate trade-off geometries. Nature Communications, 6:6278 .

Pena-Miller R., Fuentes-Hernandez A., Reading C., Gudelj I. and Beardmore R. E. (2014) Testing the optimal properties of a dual antibiotic treatment in a two-locus, two-allele model. Journal of the Royal Society Interface, 11, 20131035.

Sieber M. and Gudelj I. (2014) Do-or-die life cycles and diverse post-infection resistance mechanisms limit the evolution of parasite host ranges. Ecology Letters, 17491-498. 

Sieber M., Robb M., Forde S. E.* and Gudelj I.* (2014) Dispersal network structure and infection mechanism shape diversity in a coevolutionary bacteria-phage system.  The ISME Journal, 8, 505-514. (*corresponding authors)

Maharjan R., Nilsson S., Sung J., Haynes K., Beardmore R. E., Hurst L. D., Ferenci T.* and Gudelj I.* (2013) The form of a trade-off determines the response to competition. Ecology Letters, 16, 1267-1276. (*corresponding authors)

Beardmore R. E.*, Gudelj I.*, Lipson D. A., Hurst L. D. (2011) Metabolic trade-offs and the maintenance of the fittest and the flattest. Nature, 472, 342-346. (*first co-authors)

Estrela S. and Gudelj I. (2010) Evolution of cross-feeding could be less challenging than originally thought. PloS One, 5(11) e14121.

Levert M., Zamfir O., Clermont O., Bouvet O., Lespinats S., Hipeaux M.C., Branger C.,Picard B., Saint-Ruf C., Norel F., Balliau T., Zivy M., Le Nagard H., Cruvellier S., Chane-Woon-Ming B., Nilsson S., Gudelj I., Phan K., Ferenci T., Tenaillon O., and Denamur E.(2010) Molecular and Evolutionary Bases of Within-Patient Genotypic and Phenotypic Diversity in Escherichia coli Extraintestinal Infections. Plos Pathogens, 6(9) e1001125.

MacLean R. C., Fuentes-Hernandez A., Greig D., Hurst L. D.* and Gudelj I.* (2010) A mixture of “cheats” and “co-operators” can enable maximal group benefit. PLoS Biology, 8(9) e1000486. (*corresponding authors)

Gudejl I*, Weitz J.S.*, Ferenci T, Horner-Devine C. M., Marx C. J., Mayer J. R. and Forde S. E. (2010)  An integrative approach to understanding diversity: from intracellular to community structure. Ecology Letters13(9), 1073-1084. (*first co-authors)

Forde S. E*, Beardmore R. E.*, Gudelj I.*, Arkin S. S., Thompson J. N. and Hurst L. D. (2008) Understanding the limits to generalisability of experimental evolutionary models Nature, 455, 220-223. (*first co-authors)

Gudelj I, Beardmore R. E., Arkin S. S. and MacLean R. C. (2007) Constraints on microbial metabolism drive evolutionary diversification in homogeneous environments.  Journal of Evolutionary Biology, 20(5), 1882-1889.

MacLean R. C. and Gudelj I. (2006) Resource competition and social conflict in experimental populations of yeast. Nature, 411(7092), 498-501.

Gudelj I, Coman C. D. and Beardmore R. E. (2006) Classifying the role of trade-offs in the evolutionary diversity of pathogens. Proceedings of the Royal Society of London A, 462, 97-116.

Gudelj I, van den Bosch F. and Gilligan C. A. (2004) Transmission rates and adaptive evolution of pathogens in sympatric heterogeneous plant populations. Proceedings of the Royal Society of London B271, 2187-2194.

Gudelj I and White K. A. J. (2004) Spatial heterogeneity, social structure and disease dynamics of animal populations. Theoretical Population Biology66, 139-149.

Gudelj I, Fitt B. D. L. and van den Bosch F. (2004) Evolution of sibling fungal plant pathogens in relation to host specialization.  Phytopathology97(7), 789-795.

Gudelj I, White K. A. J. and Britton N. F. (2004) The effects of spatial movement and group interactions on disease dynamics of social animals. Bulletin of Mathematical Biology 459, 91-108.

The Global Structures of a Spatial Model of Infectious Disease, (with R. E. Beardmore) Proceedings of the Royal Society of London A (2003) 459, 1427-1448.

Spreading Disease Through Social Groupings in Competition, (with K. A. J. White) Journal of Theoretical Biology (2001) 212, 253-269.

 

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